species:   Fugra
pid:       PID1005
parent:    FgmilR-7dps-94
paralog:   
locus:     NC_026477.1:2027144-2027431
matures:   ['UAGAGGAGCUUCUGACAAAGA', 'AUGUUGUUAUUGUUGCUUCUCAUUUAGAUUUACC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:2027144-2027431

0 out of bounds
4 alignments
2 proper strand
1 stranded perfect matches

                                     **************************                                                                                                                                                    *************************                                                    
GACCCAGGCCAAGCAGGUAGAGGAGCUUCUGACAAAGAUCAUGACAUGAGUCGGCAAAGGCACUUAUUUGUGGUUCGUCGGGAACCAGGUCAGACGGGAGGGGCUGCUGGGCUUUCCCAUCUGUGAAUUCACCAAAGUUGAAGGCCCUGUCAUAGGUAUGUUAGUGCGAGUUGCUGCCUAUGAAUUGUUGGUAGCUUACUCUUUGAAAUCUCCAAUCUAGUGGACAGUGUCAGCGUCAUGUUGUUAUUGUUGCUUCUCAUUUAGAUUUACCUUUUGGUUUUUGGGAUC
..(((((((((((.((((((((((((..(((((((.(((..((((((..(((.((....(((((....(.((((((.....)))))).)......(((((((.((...)).)))))))((((((((.....((.........)).....)))))))).....)))))((((.((((((...........))))))..))))..................)).))).))))))..)))...))))))..)..))))))).........)))))))))))..)))))...
-----------------UAGAGGAGCUUCUGACAAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUGUUGUUAUUGUUGCUUCUCAUUUAGAUUUACC----------------- l=34 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAUCUAGUGGACAGUGUCAGCGU---------------------------------------------------- l=23 a=1 ma
---------------------------------------CAUGACAUGAGUCGGCAAAGGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=0 ma*

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAUCUAGUGGACAGUGUCAGCGU---------------------------------------------------- l=23 a=1 (ma)
-----------------------------------------UGACAUGAGUCGGCAAAGGCACUc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-100110001100
fn-001
